@farbel @Black_Flag A medical example: Phage therapy, pioneered in the USSR.
@farbel @Black_Flag A medical example: Phage therapy, pioneered in the USSR.
We have a new preprint describing a method for #bacteriophage phylogenetics and comparative genomics.
Maybe useful for those interested in all the amazing #phages out there and their bizarre mosaic genomes
Towards a unifying phylogenomic framework for tailed phages
https://www.biorxiv.org/content/10.1101/2024.10.21.619452v1.abstract
'dangerous #Merri lurker' (Merri-merri-uth nyilam marra-natj in #woiwurrung might be useful in treating bacterial infections.
#Bacteriophage
https://www.friendsofmerricreek.org.au/bacteriophage
#AntiMicrobialResistance
https://www.monash.edu/impact-amr
Bacteriophage Virions
https://pmc.ncbi.nlm.nih.gov/articles/PMC8269216/
21y after collecting data during my PhD, we got to publish the structure of RNA-dependent RNA polymerase from #bacteriophage phi8!
Unsolvable in 2003 but #AlphaFold2 model worked!
https://www.nature.com/articles/s41598-024-75213-7
Lesson learned: never discard data!
Great job Kamel El Omari getting it over the line!
"The number of viruses that we found is absolutely wild. We found many viruses that we know very little about and many others that we have never seen before. It's amazing how much untapped biodiversity is all around us. And you don't even have to go far to find it; it's right under our noses," said Dr Erica M. Hartmann.
#microbiology #bacteriophage #biology #research #science #nature
https://www.labroots.com/trending/microbiology/27892/world-mysterious-microbes-on-toothbrush
i did a Summer internship studying homing introns in college. big advance!
"This work demonstrates how a homing endonuclease can be deployed in interference competition among viruses and provide a relative fitness advantage. Given the ubiquity of homing endonucleases, this selective advantage likely has widespread evolutionary implications in diverse plasmid and viral competition as well as virus-host interactions."
For #ThrowbackThursday , here is the first complete genome sequence: 5375 bp of Phi-X174. Fred Sanger, et al., 1977.
Personalized Phage Therapy Heals Cat With Deadly Bacterial Infection, via Hebrew University, published by #Veterinary Quarterly
#Medicine #PhageTherapy #Microbiology
#MDRO #bacteria
#bacteriophage
#cats
#pets
#SciComm
https://www.forbes.com/sites/grrlscientist/2024/05/30/personalized-phage-therapy-heals-cat-with-deadly-bacterial-infection/
Personalized Phage Therapy Heals Cat With Deadly Bacterial Infection, via Hebrew University, published by #Veterinary Quarterly
#Medicine #PhageTherapy #Microbiology
#MDRO #bacteria
#bacteriophage
#cats
#pets
#SciComm
https://www.forbes.com/sites/grrlscientist/2024/05/30/personalized-phage-therapy-heals-cat-with-deadly-bacterial-infection/
'Zombie cells' in the sea: #Viruses keep the most common #marine #bacteria in check.
#SAR11 #bacteriophage #pelagiphage
https://phys.org/news/2024-05-zombie-cells-sea-viruses-common.html
My new story for the Medical Post/Canadian Healthcare Network.
#Doctors and #pharmacists in Canada can log on for free. Here are a few paragraphs.
Could a century old treatment be an answer to antibiotic resistance?
In a first in Canada, a patient with an #antibiotic resistant artificial joint infection has received treatment with phage therapy and is showing promising early responses.
“This is cutting edge stuff, and a potentially new technology,” said Dr. Marisa Azad, the infectious diseases physician who treated the patient. She is also an assistant professor of medicine at the University of Ottawa.
The patient presented with severe periprosthetic joint infection (PJI) in the summer of 2023. She had already undergone multiple surgeries and had experienced several relapses and infections with the same persistent bacteria.
“She’d been on multiple very prolonged courses of antibiotics and had a severe drug allergy to two major drug classes of antibiotics. I was extremely limited in what I could use to treat her,” Dr. Azad told the Medical Post in an interview.
That’s when the idea arose of trying an experimental treatment course with phage therapy. The team got approval for doing the experimental treatment from Health Canada, and worked with Winnipeg-based Cytophage, which supplied the phages.
“We developed a protocol and gave her therapy over two weeks while she was admitted to hospital. She’s completed her therapy. Now we’re monitoring her closely and giving her adjunctive antibiotics,” she said.
The idea didn’t come out of the blue. In the medical literature, a study from just last year in Clinical #Infectious Diseases provided a review of 33 previously published cases of patients with end-stage, refractory bone and joint infections (BJI) who underwent treatment with phage therapy. The authors found that from those case reports, “29 (87%) achieved microbiological or clinical success, two (5.9%) relapsed with the same organisms, and two (5.9%) with a different organism” with no serious adverse events.
The conclusions of that paper stated there were “important advantages, disadvantages, and barriers to the implementation of phage therapy for BJIs.” Yet, at the same time, the authors added they, “believe that if phage therapy were to be used earlier in the clinical course, fewer cumulative antibiotics may be needed in an individual treatment course.”
The word phage is short for #bacteriophage, a word coined in 1917—literally meaning bacteria-eater. They are viruses whose lifecycle depends on certain types of bacteria.
“They latch on to specific types of bacteria and inject their genetic material into the bacterial cell." Dr. Azad explained. "They take over the bacterial cells’ machinery to produce more little viruses inside and explode or burst open the bacteria,” releasing viral particles that can go and infect other cells of the same type of bacteria.
Intriguingly, each #phage targets a specific type of #bacteria...
The story of phages started over 100 years ago. They were independently discovered, first in 1915 by a British pathologist, Frederick Twort, and then again in 1917 by French-Canadian microbiologist Felix d’Herelle. And...
#MedMastodon #IDmastodon #microbiology @medmastodon
https://www.canadianhealthcarenetwork.ca/could-century-old-treatment-be-answer-antibiotic-resistance
Study suggests #host_response needs to be studied along with other #bacteriophage research.
https://phys.org/news/2024-04-host-response-bacteriophage.html
Researchers reveal dual-function mechanism of #bacteriophage-derived #protein #AcrIIA15.
https://phys.org/news/2024-03-reveal-dual-function-mechanism-bacteriophage.html
First atom-level structure of packaged #viral #genome reveals new properties and dynamics.
https://phys.org/news/2024-03-atom-packaged-viral-genome-reveals.html
A team led by #BioEGSB staff scientist Vivek Mutalik demonstrated for the first time that they can, on a genome-wide scale, identify #bacteriophage genes that are essential (or not) to infecting bacteria. They can then replace non-essential DNA with distinctive barcode tags. These barcodes could enable investigators and clinicians to quickly identify and track different phages in diverse settings, similar to how product barcodes are used in supermarkets.
https://biosciences.lbl.gov/2024/01/18/barcoding-bacteriophages/
Nucleotide and force-dependent mechanisms control how the viral genome of lambda #bacteriophage is inserted into capsids. https://elifesciences.org/articles/94128?utm_source=mastodon&utm_medium=social&utm_campaign=organic_insights
https://www.cbc.ca/news/canada/manitoba/bacteriophage-antibiotic-resistance-winnipeg-scientist-1.7046674 “His research involves #phages — or #viruses of #bacteria — which work by binding themselves to a bacteria and injecting their genetic information inside, creating more of themselves until they burst out of the bacteria, looking for more hosts to kill.” #Bacteriophage
Scientists reveal the #molecular #structure of a complex #bacteriophage.
https://phys.org/news/2023-12-scientists-reveal-molecular-complex-bacteriophage.html
The tail tips, the most diversified region across #bacteriophage lambda & other long-tailed #phages, contain conserved domains which facilitate tail assembly, receptor binding, cell adsorption and DNA retention/release #PLOSBiology https://plos.io/3Rqs6nI
#BF23 #bacteriophage study reveals that #viruses can cope with #bacterial restriction and modification.
https://phys.org/news/2023-12-bf23-bacteriophage-reveals-viruses-cope.html